#GISAID

The good folks @Gisaid have nearly 140,000 #SARSCoV2 viruses genetically sequenced. If you go to their epi section: https://www.gisaid.org/epiflu-applications/hcov-19-genomic-epidemiology/..there are some amazing findings. 1.) Tracing backw

Pavitra Roychoudhury

We have deposited 42 sequences from #Idaho to @GISAID, now updated within @nextstrain. These sequences mostly cluster with other US sequences from WA, CT, MN. Thank you to @GISAID and

1/5 NYT describes the intense global scientific collaboration happening in response to COVID. In fact, it's not really new - a key backbone for it is a WHO virus sharing

Can we talk about genomic data sharing for #covid19 #SARSCoV2 research? There is a great data portal from @NCBI, but only had ~173 genomes and ~41 raw sequencing read data

Thanks to #opendata sharing on @GISAID, http://nextstrain.org/ncov is updated with 20 new #COVID19 #SARSCoV2 sequences!- Pakistan (1, thanks to Pir Mehr Ali Shah Arid Agriculture University)- Belgium (3)- Japan (16)1/3

This would give 5-10 million infections in the US or about 2-3% cumulative prevalence. This is a long way from the 50% (R0 of 2) to 66% (R0 of 3)

황원경 유스티나

SARS-CoV-2https://www.nature.com/articles/s41564-020-0695-zFrom Coronaviridae family, 2 subfamilies, 5 genra, 27 subgenera, 39 species Phylogeny of #COVID19Yellow & Green : mainly at EuropePurple : mainly at China Red : mainly at America3 (A,

When variants of concern were first identified in late Dec, the US was not where it needed to be in terms of genomic surveillance. However, with considerable ramp up by

Jeremy Kamil 🇺🇦

Huge part of why @GISAID & local ownership of viral sequence data matters!! To achieve a robust warning system against the next pandemic we must earn the trust of ALL

It's hard for me to infer the degree to which new variants are driving the surge in cases in India, but we are seeing rapid growth in frequency of multiple

The team at the @seattleflustudy have sequenced the genome the #COVID19 community case reported yesterday from Snohomish County, WA, and have posted the sequence publicly to http://gisaid.org . There are some

Finally excited to share our work with @KoelleLab @m_a_martin and many others on features of SARS-CoV-2 spread. https://www.medrxiv.org/content/10.1101/2020.05.21.20104521v1What did we find:1. Sequenced 212 genomes from Israel @GISAID @next

Nicolás D. Franco-Sierra

Excited to share our pre-print on genomic epidemiology of SARS-CoV-2 in Colombia. Here we combine multiple approaches: whole viral genome sequencing, phylogenetic and epidemiological observations to understand COVID-19 outbreak in

💉💉 Dr. Trey is Vaccinated

No one who follows me would call me a China apologist or friend of the CCP. This entire thing could have been contained to a few neighborhoods in Wuhan had

Billy Bostickson 🏴👁&👁 🆓

BillyBostickson

1. The mysterious case of Eddie Holmes and the SARS-COV-2 genome sequence publication delayhttps://twitter.com/TheSeeker268/status/1380600964218974209Seems that Eddie was playing the "innocent card" @TheSeeker268 @franciscodeasis

Andrew Rambaut 🦠🧬🌲🔮🤦‍♂️

There are many things that are terribly wrong about this paper. Both in its content, findings and route to publication.https://www.pnas.org/content/early/2020/04/07/2004999117 The first is that tries to root a SARS-CoV-2 tree