Off the top of my head thread on (modern) scholars of plague in the Middle East (apologies in advance/add more!) Starting with Michael Dols, who wrote the first comprehensive survey on the subject. https://press.princeton.edu/books/hardcover/9780691657042/the-black-death-in-the-middle-east
Moving on (somewhat chronologically) to Lawrence Conrad who wrote his dissertation on the 6-8th century Justinian plague in the Middle East - never appeared as a book, but in the form of articles and book chapters. See https://nes.princeton.edu/publications/contagion-perspectives-pre-modern-societies for one example
Stuart Borsch wrote a really beautiful case study comparison of how the Black Death affected England and Egypt, showing how the economy of the first improved and the latter declined, largely due to the collapse of Nile irrigation systems: https://utpress.utexas.edu/books/borbla 
Our understanding of plague in the Ottoman Empire has been greatly improved by three works, beginning here with the prize winning work of Nükhet Varlik: https://www.cambridge.org/core/books/plague-and-empire-in-the-early-modern-mediterranean-world/D35B6A9462B1E2849AA2F9A75048DF69
Before I forget it, of course, the edited volume by Nükhet bringing together studies onplague and contagion around the Islamic Mediterranean: https://arc-humanities.org/products/p-80108-97110-49-7813/
A special shout out to the following work on the plague in 17-18th century Tunisia, which I still haven't fully digested as my Italian is rotten, but the author of which — Salvatore Speziale — has written great stuff in French that I have read: https://www.cdse.it/index.php?id=1010
For Morocco's epidemics and plagues of the 18-19th centuries, the indispensable survey of Muhammad al-Bazzaz, which you can now download for free here!: https://archive.org/details/awbia-maja3at/mode/2up
Speziale's work on Tunisia should be read against the earlier work of Nancy Gallagher, which also contains a great discussion of how European colonial powers used the quarantine to forward their economic interests https://books.google.com/books/about/Medicine_and_Power_in_Tunisia_1780_1900.html?id=Nj6Zd5v3qO0C
Nineteenth century Egypt has received quite a bit of attention. See the very useful survey of LaVerne Kuhnke on public health: https://publishing.cdlib.org/ucpressebooks/view?docId=ft5t1nb3mq;query=;brand=ucpress
Oh, I should mention that Kuhnke also has a great discussion of the French doctor Clot Bey in Egypt and his anti-contagionist views. Many (Medievalists) forget the prevalence of anti-contagionism in early 19th century Europe.
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